CNV Workshop

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74

Features

Compute CNV calls using a high-quality published algorithm, on or off a cluster
Publish/view CNV calls via a sophisticated web application
Visualize your CNVs in GBrowse and UCSC genome browser
Support multiple labs/groups via user and group membership
Download in XLS, CSV, XML, BED, and PDF format
View GAD phenotype, DGV CNV, and gene annotation
Compare your CNVs against the CHOP normals data set (healthy controls)
View hyperdiploidy/LOH reports
Link out to FABLE, Entrez, Entrez Gene, GAD, DGV, UCSC

Project Activity

See All Activity >

License

Affero GNU Public License

Follow CNV Workshop

CNV Workshop Web Site

Other Useful Business Software

CloudZero: The Cloud Cost Optimization Platform

CloudZero automates the collection, allocation, and analysis of your infrastructure and AI spend to uncover waste and improve unit economics.

CloudZero is the leader in proactive cloud cost efficiency. We enable engineers to build cost-efficient software without slowing down innovation. CloudZero's next-generation cloud cost optimization platform automates the collection, allocation, and analysis of cloud costs to uncover savings opportunities and improve unit economics. We are the only platform that enables companies to understand 100% of their operational cloud spend and take an engineering-led approach to optimizing that spend. CloudZero is used by industry leaders worldwide, such as Coinbase, Klaviyo, Miro, Nubank, and Rapid7.

Learn More

Rate This Project

User Ratings

5.0 out of 5 stars

★★★★★

★★★★

★★★

★★

★

ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

Filter Reviews:

All

tfileme Posted 2013-05-22

Cnv works fine.

1 user found this review helpful.

Additional Project Details

Operating Systems

BSD, Linux, Windows

Intended Audience

Advanced End Users, Developers, Healthcare Industry, Information Technology, Science/Research

User Interface

Web-based

Programming Language

Java, Perl, S/R

Database Environment

JDBC, MySQL, Perl DBI/DBD

Related Categories

Perl Bio-Informatics Software, Java Bio-Informatics Software, S/R Bio-Informatics Software

Registered

2009-06-22

Similar Business Software

Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
OmicsBox

OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex...

See Software
GenomeStudio

Visualize and analyze data generated on Illumina array platforms with GenomeStudio Software. This powerful solution supports the genotyping analysis of microarray data. Performance-optimized tools and a user-friendly graphical interface enable you to convert data into meaningful results quickly...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Alissa Interpret

Alissa Interpret is your universal genomic data interpretation software for clinical decision support. Increase your productivity, shorten the turnaround time, and maintain regulatory compliance with Alissa Interpret’s agnostic CGH and NGS tertiary analysis platform for variant interpretation...

See Software
Geneyx

Geneyx Analysis is a comprehensive solution for next-generation sequencing (NGS) data that can scale the process of FASTQ to clinical reports for hospital and commercial labs. This advanced platform integrates machine learning and AI-based features to identify novel biomedical insights, while...

See Software