fcGENE: Genotype format converter

Features

• can make SNP-wise and Individual-wise Quality Control and can filter disqualified SNPs and individuals while transoforming data
• can perform two-way format conversion of genotype SNP Data (e.g. PLINK -> imputation tool and imputation tools -> PLINK) . It can read and write both plink-formatted pedigree and binary files
• can filter impued SNPs on the basis of imputation quality score
• can generate templates of commands GWA analysis tools
• converts the genotype data from the format of one imputation tool to other.
• Transformation of imputation references into plink-format. This helps to compare genotype data with the reference panel.
• can creates of snp data in GenABEL format from the data originally given in different other formats
• can generate differently formatted files containing expeceted dose of minor allele frequency
• very helpful for researchers working on the area of statistical genetics.
• written in c++, use of STL containers
• can read and write gezipped files
• can calculate FST with --fst command
• can read and write standard genotype data with counts of alleles and allele doses
• can create vcf-format files used for BEAGLE4

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